EvoCell
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EvoCell is an open source java software to evolve ruletable based cellular automata via mutations in the rule table. The code is a mess but it seems to run fine at least under Windows and Linux :)
I presented the software at 22C3 here is a video: http://www.youtube.com/watch?v=lJxqALVjz8o
Afte kybernet died evocell was unavailable for some time. I'll try to get the old documentation back online here. Meanwhile at least the 22C3 release of evoCell is available from the metalab svn server
https://whatever.metalab.at/projects/EvoCell/releases
The latest source can be obtained here. It's released under the GPL. It's an Eclipse project so it should be easy to compile it :)